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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55314397_55406004_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55314397 - 55406004
Intron Length:
91608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GAATACTGATGA
Flanking Amino Acid:
QTFFPSHKQMVTTPNFPVVV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
41.4
-0.6
2
48.64
40.9

Associated Gene:

Gene:
SYN3
Ensembl Gene ID:
ENSAPLG00000010781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011240
55249299 - 55436457
187159