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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55321743_55322378_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55321743 - 55322378
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTACAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTCACCTTACCT
Flanking Amino Acid:
HRYHLGCGCKIRPCYYLPCF
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.9
0.63
0.9
70.5
38.9
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
63.7
0.51
1.7
77.46
44.6

Associated Gene:

Gene:
TIMP3
Ensembl Gene ID:
ENSAPLG00000023484
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037987
55319905 - 55399548
79644