Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55329698_55353561_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55329698 - 55353561

Intron Length:

23864

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCATGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TTATTTATAATT

Flanking Amino Acid:

PQDAFCNSDIVIRAKVVGKK

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

73.2

0.52

69.1

35.7

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

64.3

0.53

1.5

81.08

34.6

Associated Gene:

Gene:

TIMP3

Ensembl Gene ID:

ENSAPLG00000023484

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037987

55319905 - 55399548

79644