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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5533574_5604122_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5533574 - 5604122
Intron Length:
70549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TTTTTGTAGATT
Flanking Amino Acid:
WIICKEVSSHDPEELPVHDA
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.8
39.2
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
30.9
-2.2
2.6
29.8
36.6
Minor BPS
48.9
-0
2.3
77.73
39.7

Associated Gene:

Gene:
USP6NL
Ensembl Gene ID:
ENSAPLG00000010144
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039025
5493085 - 5604274
111190