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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55444975_55446087_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
55444975 - 55446087
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTGCTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTGCTTTGATA
Flanking Amino Acid:
PASFVCFQEPEKVAGVYKDL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
71.3
0.48
1
68.3
37.5
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
63.9
0.43
1.3
69.19
38.1

Associated Gene:

Gene:
FBXO7
Ensembl Gene ID:
ENSAPLG00000010521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010965
55442226 - 55452304
10079