About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55446172_55447341_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55446172 - 55447341
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTATATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTCTTATAT
Flanking Amino Acid:
VPLGDLVAINATLKINKEIK
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.2
0.75
0.8
77.3
35.8
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
63.6
0.5
1.7
80.55
41.4

Associated Gene:

Gene:
FBXO7
Ensembl Gene ID:
ENSAPLG00000010521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010965
55442226 - 55452304
10079