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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55449048_55450798_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55449048 - 55450798
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
CTATCTCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATTTCTGAATG
Flanking Amino Acid:
QEEVQSNDDRAGSSIEFPSG
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.1
0.47
1
71.7
32.9
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
61.9
0.24
1.5
63.69
38.2

Associated Gene:

Gene:
FBXO7
Ensembl Gene ID:
ENSAPLG00000010521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010965
55442226 - 55452304
10079