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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55451100_55452005_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55451100 - 55452005
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGCGG
5'SS Class:
major
3'SS Sequence:
TATTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCCCTATTA
Flanking Amino Acid:
CRALLPAWGYSSDTEFSITL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.3
46.1
49.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.5
0.82
0.8
81.1
35.8
Minor 5ss
34.3
-1.8
3.5
47.2
48.2
Minor BPS
63.3
0.41
1.9
80.12
36

Associated Gene:

Gene:
FBXO7
Ensembl Gene ID:
ENSAPLG00000010521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010965
55442226 - 55452304
10079