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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55484084_55484351_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55484084 - 55484351
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
TTTCATCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GGTAACTGAACT
Flanking Amino Acid:
VRLTQKGLEYAKEVGLEILK
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
65.3
40.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.5
0.66
0.8
74.5
30.4
Minor 5ss
38.6
-1.3
3.1
49
47.2
Minor BPS
55.8
0.26
1.7
73.21
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546