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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55484464_55485926_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55484464 - 55485926
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTCTTTTACT
Flanking Amino Acid:
GLGNVKYNISRIRIATVEFP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
74.2
0.6
1
67
39.4
Major PPT
70
0.45
0.9
61
39.8
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
80.4
1.04
1.5
96.11
29.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546