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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55486056_55487407_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55486056 - 55487407
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTACTTTATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACTT
Flanking Amino Acid:
DMNWNIRTWMFRDSGRSTVY
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
68
36.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.4
0.71
0.9
77.5
35.6
Minor 5ss
44.7
-0.6
2.5
57.8
40.7
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546