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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55487564_55488330_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55487564 - 55488330
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
CAGTACTTGACC
Flanking Amino Acid:
DIDIKLNGKSGFLHNFFIKY
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
65.1
0.38
1
57
39.5
Major PPT
84.6
0.78
0.6
84.8
22.9
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
59.6
0.28
1.6
63.51
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546