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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55488395_55489166_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55488395 - 55489166
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCCTT
5'SS Class:
major
3'SS Sequence:
TGCTTTTATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CAGTCCATAACC
Flanking Amino Acid:
KPIHRSLATNSCPNIRSGIQ
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
72.7
44.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81
0.7
0.9
76.3
36.9
Minor 5ss
45.2
-0.5
3.1
64.9
39.7
Minor BPS
63.2
0.4
1.7
68.61
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546