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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55492449_55493726_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55492449 - 55493726
Intron Length:
1278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGGAACCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTGCCTTGGAAC
Flanking Amino Acid:
TEIFGSIIPEVAKYSVTPYP
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
67.2
0.39
1
58
42.8
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
48.8
-0.1
1.6
60.94
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546