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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55493898_55494452_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55493898 - 55494452
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTCTGGCAACC
Flanking Amino Acid:
TNQSLFTMNTTANTSIALNI
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
39.7
-0.8
2.5
56.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546