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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55494521_55496107_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55494521 - 55496107
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACTT
Flanking Amino Acid:
QKLMGSLCLNRLQFSLTHSN
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.8
0.8
0.6
84.9
22.8
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
56.7
0.29
1.8
79.05
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010557
55483963 - 55498508
14546