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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55500350_55500452_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55500350 - 55500452
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CGCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TCTCTCTTTTCT
Flanking Amino Acid:
IKKGFVPNMHVEGVFYVNDP
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
58.8
40.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
65
0.34
0.8
57.5
27
Minor 5ss
28.6
-2.5
3.3
36.1
41.1
Minor BPS
42.3
-0.5
3.6
72.84
44

Associated Gene:

Gene:
RTCB
Ensembl Gene ID:
ENSAPLG00000008226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008538
55499275 - 55510326
11052