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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55500532_55500633_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55500532 - 55500633
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
EELRNACRGGGAGGFLPAMK
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
RTCB
Ensembl Gene ID:
ENSAPLG00000008226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008538
55499275 - 55510326
11052