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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55500702_55502621_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55500702 - 55502621
Intron Length:
1920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
ATTTCCTTCACT
Flanking Amino Acid:
NVAALPGIVHRSIGLPDVHS
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
83.2
0.75
0.8
80.5
31.1
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
79.9
1.02
1.6
94.5
32.7

Associated Gene:

Gene:
RTCB
Ensembl Gene ID:
ENSAPLG00000008226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008538
55499275 - 55510326
11052