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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55505789_55506780_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55505789 - 55506780
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATCTGTTTATTT
Flanking Amino Acid:
SRGLGHQVATDALVAMEKAM
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.1
0.7
0.9
73.1
41.8
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
49.6
0.05
2
69.31
42.7

Associated Gene:

Gene:
RTCB
Ensembl Gene ID:
ENSAPLG00000008226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008538
55499275 - 55510326
11052