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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55506957_55507573_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55506957 - 55507573
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTATTTCACA
Flanking Amino Acid:
RSSMTFLTRQAFAKVFNTTP
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.1
0.57
0.8
73.4
30.8
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
56.3
0.19
2
71.81
40.6

Associated Gene:

Gene:
RTCB
Ensembl Gene ID:
ENSAPLG00000008226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008538
55499275 - 55510326
11052