Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55508119_55509013_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55508119 - 55509013

Intron Length:

895

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

AACTATTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

ACTGCTATAAAA

Flanking Amino Acid:

ETFGTTCHGAGRALSRAKSR

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.1

67.5

39.4

Major BPS

65.3

0.38

71.6

30.1

Major PPT

71.4

0.48

0.9

62.5

43.2

Minor 5ss

36.4

-1.5

51.1

45.2

Minor BPS

48.6

-0.1

1.8

59.6

40.3

Associated Gene:

Gene:

RTCB

Ensembl Gene ID:

ENSAPLG00000008226

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008538

55499275 - 55510326

11052