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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55536480_55537434_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
55536480 - 55537434
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
CCTTCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACC
Flanking Amino Acid:
CVLNCNRPSRPMNEMNLSPV
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
62.7
44.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79
0.65
0.7
69.7
31.1
Minor 5ss
56.2
0.21
2.3
70.9
39.7
Minor BPS
78.9
0.89
1
84.85
26.7

Associated Gene:

Gene:
PRDM4
Ensembl Gene ID:
ENSAPLG00000009846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010268
55536382 - 55551057
14676