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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55537569_55538195_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55537569 - 55538195
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCCACTGAATT
Flanking Amino Acid:
SPTHNAIPAPGLPVAIPNLG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
51.6
0.13
1.7
67.26
43.5

Associated Gene:

Gene:
PRDM4
Ensembl Gene ID:
ENSAPLG00000009846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010268
55536382 - 55551057
14676