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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55544094_55545307_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55544094 - 55545307
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATAACTGATTT
Flanking Amino Acid:
LRQSLMGAEVGVWTRETIPV
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.7
0.42
1
62.7
38.7
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
45.7
-0.2
1.8
62.84
40.7

Associated Gene:

Gene:
PRDM4
Ensembl Gene ID:
ENSAPLG00000009846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010268
55536382 - 55551057
14676