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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55545427_55546170_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55545427 - 55546170
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCCTAAGA
Flanking Amino Acid:
TDKAASHIWKIYHNGVLEFC
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
67.9
40
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.8
0.65
0.9
77.5
31.3
Minor 5ss
28.4
-2.5
3.3
41
45.3
Minor BPS
48.8
-0.1
2
64.1
42.3

Associated Gene:

Gene:
PRDM4
Ensembl Gene ID:
ENSAPLG00000009846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010268
55536382 - 55551057
14676