Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55547644_55549030_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55547644 - 55549030

Intron Length:

1387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

CTTACTGTCAGT

Flanking Amino Acid:

NLRTHLKIHTGQKNYRCTLC

Intron Amino Acid Position:

671

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.6

33.8

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

0.58

0.9

69.7

36.7

Minor 5ss

26.4

-2.7

3.5

38.5

46.7

Minor BPS

41.4

-0.5

2.5

63.46

47.2

Associated Gene:

Gene:

PRDM4

Ensembl Gene ID:

ENSAPLG00000009846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010268

55536382 - 55551057

14676