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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55549200_55550549_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55549200 - 55550549
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AGCAAACTAACT
Flanking Amino Acid:
DLKQHVLTHTQERQIKCPKC
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
80.2
0.68
1
77.3
37
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
43
-0.4
2
59.57
42.6

Associated Gene:

Gene:
PRDM4
Ensembl Gene ID:
ENSAPLG00000009846
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010268
55536382 - 55551057
14676