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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55552627_55553352_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
55552627 - 55553352
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCAATTTAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
78.9
29.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.2
0.88
0.7
84
30.3
Minor 5ss
36.8
-1.5
2.7
42.7
38.4
Minor BPS
57.8
0.32
1.7
74.95
41.5

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554