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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55555940_55556953_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55555940 - 55556953
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GTGGTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAG
Flanking Amino Acid:
WNHFSPCNFLASTEDGFVYC
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
78.7
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.3
0.41
0.9
66.1
40.8
Minor 5ss
35.7
-1.6
2.9
44
38.6
Minor BPS
65.9
0.36
1.4
67.73
40.3

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554