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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55557066_55558762_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55557066 - 55558762
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCCTGATAG
Flanking Amino Acid:
TQTLISGSYDKSAVLYDCRS
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73
0.52
1
69.6
36.9
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
57.5
0.1
1.9
69.97
42.7

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554