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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55559564_55561570_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55559564 - 55561570
Intron Length:
2007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
GATGCATTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
VLDLSWNKQSRNVLASASAD
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.7
0.31
1.1
60
44.7
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554