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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55561645_55562979_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55561645 - 55562979
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCACATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATGTTTTATCT
Flanking Amino Acid:
EKKKKKKGKKNLSAEGTVEG
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.8
0.45
1
62.3
38
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
58.9
0.36
1.7
76.08
41.1

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554