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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55564569_55566434_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55564569 - 55566434
Intron Length:
1866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTCACTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCCTTTTCACT
Flanking Amino Acid:
QDPYITLKSTDQYEQEDFLI
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.3
0.66
0.9
77.2
36.7
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
50.7
0.1
1.8
67.89
43.7

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554