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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55566521_55566960_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55566521 - 55566960
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
AATTCCCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATGTTCTGAAAT
Flanking Amino Acid:
LDKYDEEEDTGDTKLGETLA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
65.8
0.36
0.9
56.7
39.3
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
61.8
0.45
1.5
76.42
39.8

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554