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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55567146_55567893_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55567146 - 55567893
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TGTCTTTGAACA
Flanking Amino Acid:
RLVGEARERLREDADDSDED
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
72.4
0.51
1
69.2
40.7
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
61.1
0.34
1.4
70.24
35.4

Associated Gene:

Gene:
PWP1
Ensembl Gene ID:
ENSAPLG00000009587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009993
55552606 - 55568159
15554