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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55585202_55588623_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55585202 - 55588623
Intron Length:
3422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCACTTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CTTTCTCTAATT
Flanking Amino Acid:
NCVDIYNHAKFLGVTELSSY
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
78
0.63
0.8
73.3
31.3
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
68
0.64
1.7
84.17
37.2

Associated Gene:

Gene:
BTBD11
Ensembl Gene ID:
ENSAPLG00000009119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036667
55584992 - 55747155
162164
ENSAPLT00000009517
55584992 - 55747155
162164