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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55588738_55591855_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55588738 - 55591855
Intron Length:
3118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTGACTATTT
Flanking Amino Acid:
LLIKNNEIMELLSAAKFFQL
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
44.5
-0.3
2.4
73.75
43.2

Associated Gene:

Gene:
BTBD11
Ensembl Gene ID:
ENSAPLG00000009119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036667
55584992 - 55747155
162164
ENSAPLT00000009517
55584992 - 55747155
162164