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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55592863_55594368_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55592863 - 55594368
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGTATTTCAATC
Flanking Amino Acid:
HRVLLFTASPRFKALLSSKP
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.4
0.62
0.8
76.7
32
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
49.1
-0
1.5
56.45
36

Associated Gene:

Gene:
BTBD11
Ensembl Gene ID:
ENSAPLG00000009119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036667
55584992 - 55747155
162164
ENSAPLT00000009517
55584992 - 55747155
162164