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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55595352_55600632_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55595352 - 55600632
Intron Length:
5281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTGTTTGTATTT
Flanking Amino Acid:
CILRVRCERQNEVISQQLSV
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.4
44.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.1
0.66
0.8
80.4
31.6
Minor 5ss
33
-1.9
3.4
49.4
46.4
Minor BPS
44.6
-0.3
2.1
61.91
43.6

Associated Gene:

Gene:
BTBD11
Ensembl Gene ID:
ENSAPLG00000009119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036667
55584992 - 55747155
162164