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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55600705_55606899_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55600705 - 55606899
Intron Length:
6195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTGTCTAAACA
Flanking Amino Acid:
LMFEILKASKFRVTRTQVIH
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
67.6
0.4
1.1
62.9
42.3
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
59.8
0.3
1.8
71.26
41.2

Associated Gene:

Gene:
BTBD11
Ensembl Gene ID:
ENSAPLG00000009119
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036667
55584992 - 55747155
162164