Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55798924_55802348_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55798924 - 55802348

Intron Length:

3425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGACGG

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAGAT

U12 Branch Point Sequence:

AAGTGCTTAAGA

Flanking Amino Acid:

HAGTSGIQQQALLEEKILLN

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

45.6

Major BPS

67.4

0.43

1.1

63.4

42.8

Major PPT

96.3

1.04

0.5

92.6

17.2

Minor 5ss

37.4

-1.4

47.9

47.6

Minor BPS

51.9

0.06

2.1

62.68

43.5

Associated Gene:

Gene:

CRY1

Ensembl Gene ID:

ENSAPLG00000008378

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047778

55798856 - 55815847

16992