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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55801036_55801131_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55801036 - 55801131
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATCCTTGATA
Flanking Amino Acid:
DNQQSHLLQAGRTSLGTGIS
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.6
0.53
1
71.6
42.6
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
70.7
0.65
1.1
70.31
35.3

Associated Gene:

Gene:
CRY1
Ensembl Gene ID:
ENSAPLG00000008378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030407
55797264 - 55815847
18584