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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55801036_55802348_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55801036 - 55802348
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACGG
5'SS Class:
major
3'SS Sequence:
TTTAAATTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATCCTTGATA
Flanking Amino Acid:
HAGTSGIQQQGRTSLGTGIS
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
59
45.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.6
0.53
1
71.6
42.6
Minor 5ss
37.4
-1.4
3
47.9
47.6
Minor BPS
70.7
0.65
1.1
70.31
35.3

Associated Gene:

Gene:
CRY1
Ensembl Gene ID:
ENSAPLG00000008378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008754
55800928 - 55815847
14920