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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55805335_55805442_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55805335 - 55805442
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
RRTDPNGDYIRRYLPVLRGF
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
74.2
36.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
34.6
-1.8
2.9
44.3
43.4
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
CRY1
Ensembl Gene ID:
ENSAPLG00000008378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047778
55798856 - 55815847
16992
ENSAPLT00000030407
55797264 - 55815847
18584
ENSAPLT00000008754
55800928 - 55815847
14920