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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55805595_55807922_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55805595 - 55807922
Intron Length:
2328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
CTGATTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTCACACTAACT
Flanking Amino Acid:
LWISWEEGMKVFEELLLDAD
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
79
0.72
1
69
38.9
Major PPT
66.5
0.37
1.1
64
41.8
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
55.5
0.25
2
79.07
42.4

Associated Gene:

Gene:
CRY1
Ensembl Gene ID:
ENSAPLG00000008378
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047778
55798856 - 55815847
16992
ENSAPLT00000030407
55797264 - 55815847
18584
ENSAPLT00000008754
55800928 - 55815847
14920