Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55857745_55861422_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

55857745 - 55861422

Intron Length:

3678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

ATTTATCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

AATATGTGAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

0.7

0.8

78.6

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

46.2

-0.2

2.1

64.91

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040586

55853156 - 55862657

9502