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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55898171_55899524_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
55898171 - 55899524
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATAGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCACCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTAGAAAT
Flanking Amino Acid:
DTEEYKSAKPNINLITGHLE
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
64.4
35.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.2
0.68
0.8
70.9
34.9
Minor 5ss
45.6
-0.5
3.3
63
43.3
Minor BPS
48.8
-0
1.8
71.81
38.5

Associated Gene:

Gene:
RIC8B
Ensembl Gene ID:
ENSAPLG00000008075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008413
55889930 - 55923703
33774