About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55899670_55899826_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55899670 - 55899826
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACATT
5'SS Class:
major
3'SS Sequence:
TCACTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTCTGTATCA
Flanking Amino Acid:
EFLFVLCKERVDSLLKYTGY
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
76.8
38.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
82
0.72
0.8
76.5
31.8
Minor 5ss
52.7
0.09
2.6
74.6
41.7
Minor BPS
57.9
0.24
2.2
78.76
38.3

Associated Gene:

Gene:
RIC8B
Ensembl Gene ID:
ENSAPLG00000008075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008413
55889930 - 55923703
33774