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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_55899972_55902386_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55899972 - 55902386
Intron Length:
2415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
TTTCTCTTTTTT
Flanking Amino Acid:
RNIRKFIKAQVLPPLRDVSN
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.4
30.3
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
71.6
0.49
1
66.1
40.8
Minor 5ss
34
-1.8
2.9
41.9
44.8
Minor BPS
42.9
-0.4
3.5
76.71
40

Associated Gene:

Gene:
RIC8B
Ensembl Gene ID:
ENSAPLG00000008075
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008413
55889930 - 55923703
33774